PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_7D519210E.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 256aa    MW: 28944.2 Da    PI: 10.4145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_7D519210E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-1782127148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rgr+T+ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
  Traes_5AS_7D519210E.2  82 RGRMTPHEERLILELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 127
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-96289IPR009057Homeodomain-like
SuperFamilySSF466894.49E-2262134IPR009057Homeodomain-like
PROSITE profilePS500904.4266276IPR017877Myb-like domain
PROSITE profilePS5129425.95577131IPR017930Myb domain
SMARTSM007171.4E-1681129IPR001005SANT/Myb domain
PfamPF002493.7E-1582126IPR001005SANT/Myb domain
CDDcd001671.00E-1284127No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2090128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
EAKVIRPLGN KGQLPSLPSS FILLLLPNRL EFIKDLVLKL EPTSTQRKKS KKTGSQPIQG  60
LNRTGKSCRL RWVNYLHPGL KRGRMTPHEE RLILELHARW GNRWSRIARK LPGRTDNEIK  120
NYWRTHMRKK AQERKRSVSP SPSSSSVTYQ SIQPQTPSIM GIGEQELHGG SSCITSILKG  180
TPADMDGYLM DQIWMEIEAP SGVNFHDGKD NSYSSPSGPL LPSPMWDYYS PEAGWKMDEI  240
KMAPQVSYSK GIGPSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-186313137105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0095360.0BT009536.1 Triticum aestivum clone wr1.pk0139.g11:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201688.11e-144myb-related protein MYBAS2-like isoform X2
SwissprotQ4JL761e-101MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A446SS861e-160A0A446SS86_TRITD; Uncharacterized protein
STRINGTraes_5AS_7D519210E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.37e-50myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]