PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_9C6171380.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 360aa    MW: 39548.2 Da    PI: 8.1511
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_9C6171380.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.6e-3292148259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Traes_5AS_9C6171380.1  92 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPSCPVKKKVEHAE-DGQISEIIYKGKHNHQ 148
                            8**************************************99.***************8 PP
2WRKY108.72.9e-34248306159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Traes_5AS_9C6171380.1 248 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 306
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-2888150IPR003657WRKY domain
SuperFamilySSF1182903.14E-2590150IPR003657WRKY domain
SMARTSM007741.1E-3391149IPR003657WRKY domain
PROSITE profilePS5081123.19292150IPR003657WRKY domain
PfamPF031061.7E-2492148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-37234308IPR003657WRKY domain
SuperFamilySSF1182901.7E-29240308IPR003657WRKY domain
PROSITE profilePS5081137.413243308IPR003657WRKY domain
SMARTSM007747.0E-40248307IPR003657WRKY domain
PfamPF031062.5E-26249306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGGFGMSHQQ ALAQVTAQAS HSPLRMFDHT EQPSFSAAAT SSGALQNMSS AANVAEMSEM  60
ATTISNNEHA AFQSAEASHR YQVPAPVDKP ADDGYNWRKY GQKVVKGSDC PRSYYKCTHP  120
SCPVKKKVEH AEDGQISEII YKGKHNHQRP PNKRAKDGSS SAAEQNEQSN DTASGLSGVR  180
RDQEAVYGMS EQLSGLSDGD DKDDGESRPN EVDDRENDCK RRNIQISSQK ALTESKIIVQ  240
TTSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTFAGCN VRKHIERASS DPKAVITTYE  300
GKHNHEPPVG RGSNQNGGNS NRSQQKGSNS MSSNQASHTR TDLGNVNQGQ IGVLQFKREE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-4092308877Probable WRKY transcription factor 4
2lex_A6e-4092308877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2168400.0JX216840.1 Hordeum vulgare WRKY61 protein (WRKY61) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168255.10.0probable WRKY transcription factor 4
SwissprotQ9ZQ701e-104WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A3B6KEM00.0A0A3B6KEM0_WHEAT; Uncharacterized protein
TrEMBLA0A446SU580.0A0A446SU58_TRITD; Uncharacterized protein
STRINGTraes_5AS_9C6171380.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-102WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]