PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_BDDD76A8B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 78aa    MW: 9515.97 Da    PI: 10.4484
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_BDDD76A8B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-17655148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                           r+rW +eEd +l  +v+q+G++ W+++a++m+  + R +k+c +rw +yl
  Traes_5AS_BDDD76A8B.1  6 RQRWRPEEDAILRSYVRQYGPREWNLVAQRMNvpLDRDAKSCLERWKNYL 55
                           89***********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.015159IPR017930Myb domain
SMARTSM007178.7E-13557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-23773IPR009057Homeodomain-like
SuperFamilySSF466892.48E-16876IPR009057Homeodomain-like
CDDcd001673.80E-9855No hitNo description
PfamPF139212.2E-15970No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MEMKERQRWR PEEDAILRSY VRQYGPREWN LVAQRMNVPL DRDAKSCLER WKNYLRPGIK  60
KGSLTDDEQR LVIRLQAK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4434561e-128AB443456.1 Triticum aestivum WRS2 mRNA for Myb transcription factor, complete cds.
GenBankJF9519021e-128JF951902.1 Triticum aestivum clone TaMYB18 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182147.12e-48protein rough sheath 2
SwissprotQ9S7B21e-43RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A287QL509e-49A0A287QL50_HORVV; Uncharacterized protein
TrEMBLA0A287QLR62e-48A0A287QLR6_HORVV; Uncharacterized protein
TrEMBLA0A453JX532e-48A0A453JX53_AEGTS; Uncharacterized protein
STRINGTraes_5AS_BDDD76A8B.13e-50(Triticum aestivum)
STRINGTraes_5DS_8F3BD4450.24e-48(Triticum aestivum)
STRINGTRIUR3_13997-P11e-48(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.13e-41MYB family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]