PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_D238844BB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 289aa    MW: 31169.5 Da    PI: 6.1129
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_D238844BB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-086282346
                           -HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                           +W+ Ia++++ gRt++++k++w++
  Traes_5AS_D238844BB.1  6 RWSQIAARLP-GRTDNEIKNFWNS 28
                           4*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.812134IPR017930Myb domain
SuperFamilySSF466891.3E-7538IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-11531IPR009057Homeodomain-like
PfamPF002496.1E-6628IPR001005SANT/Myb domain
CDDcd001677.46E-6627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSCYSRWSQI AARLPGRTDN EIKNFWNSTI KKRLKMNSAA SSPATTECAS PREPKLDGGS  60
ASCLDLTSLE DGSHHGMKSM WRMDSSSSSS SSSSIQQSRP STMAPAANRG YGGLLLPLPD  120
QFCGVAPSTH TSVPPFFHDH SSFKQVSPLR AGGYYPHGMA MEGGGGSCFT GEEAVGGGGE  180
HSVLFSVPPL LEPMAVALQD QTLMASTGNS DNNHRNTNST AEGTTLSSKN GCNINDDNNS  240
KNNINSVVSY WEQHGHQQHM SRNVVMGEWD LEELMKDVSC LPFLDFQVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6720680.0AY672068.1 Hordeum vulgare subsp. vulgare myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177941.10.0anthocyanin regulatory C1 protein-like
TrEMBLA0A446STW50.0A0A446STW5_TRITD; Uncharacterized protein
STRINGTraes_5AS_D238844BB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.16e-15myb domain protein 83
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]