PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_D9A4C1AB0.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 207aa    MW: 23798.5 Da    PI: 6.8798
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_D9A4C1AB0.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.6e-182366146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                           rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Traes_5AS_D9A4C1AB0.2 23 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 66
                           89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.102117IPR017930Myb domain
SuperFamilySSF466894.6E-22377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-11329IPR009057Homeodomain-like
PROSITE profilePS5129423.861872IPR017930Myb domain
SMARTSM007171.2E-152270IPR001005SANT/Myb domain
PfamPF002492.4E-162366IPR001005SANT/Myb domain
CDDcd001671.57E-112566No hitNo description
Gene3DG3DSA:1.10.10.608.6E-203067IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
GLKRTGKSCR LRWLNYLRPD VKRGNFTADE QLLILDLHSR WGNRWSKIAQ HLPGRTDNEI  60
KNYWRTRVQK HAKQLNCDAN STKFKDAMKY LWMPRLADHH LQQASTVGDH LVPGPPTAYM  120
ESSGMVTSSS DSFASESYDG ARCANASVGE MIHSGDWVQE QNQGFWPETN QNFQLQDSEL  180
SGWVQGFSES DSLAENFWSL EDIWKMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1747040106B-MYB
1gv2_A2e-1747037103MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-1747037103C-Myb DNA-Binding Domain
1msf_C2e-1747037103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3605510.0AK360551.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120I18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162380.11e-141myb-related protein 340-like
SwissprotQ2QZJ83e-81JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A1D5YTG31e-154A0A1D5YTG3_WHEAT; MYB transcription factor 79
TrEMBLA0A446SSE01e-154A0A446SSE0_TRITD; Uncharacterized protein
TrEMBLA0A446SSN21e-155A0A446SSN2_TRITD; Uncharacterized protein
TrEMBLM8AKK01e-155M8AKK0_TRIUA; Transcription factor MYB21
STRINGTRIUR3_32110-P11e-155(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-56myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]