PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AS_E9E60BA43.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24717.4 Da    PI: 9.3
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AS_E9E60BA43.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.5e-281059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rie  s rqvtfskRr+g++KKA+EL +LCd++v vi+fsstg+lyey+s
  Traes_5AS_E9E60BA43.2 10 RIEKMSSRQVTFSKRRHGLMKKAHELAILCDVQVGVIVFSSTGHLYEYAS 59
                           89**********************************************86 PP
2K-box72.31.4e-2486175998
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            +  ++   ++ e++kL++e++ Lq  +R+l+Ge L++L +++L  Le+qLeksl+ iR+kK++ + + i +l +k    ++en +L++
  Traes_5AS_E9E60BA43.2  86 NPVSQIMFWEGEVRKLQQEMQILQDHHRKLMGERLSNLGVNDLCLLENQLEKSLRCIREKKEQSFANYIVQLNEKGYIFHQENFQLSE 173
                            56677889******************************************************************************98 PP

                  K-box  97 kl 98 
                            + 
  Traes_5AS_E9E60BA43.2 174 ET 175
                            75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.17161IPR002100Transcription factor, MADS-box
CDDcd002654.32E-35283No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-28395IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-2290174IPR002487Transcription factor, K-box
PROSITE profilePS5129712.15391184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MARGKIVIRR IEKMSSRQVT FSKRRHGLMK KAHELAILCD VQVGVIVFSS TGHLYEYASS  60
TTTTTMGMPS IIHKYQSAQE NHQLLNPVSQ IMFWEGEVRK LQQEMQILQD HHRKLMGERL  120
SNLGVNDLCL LENQLEKSLR CIREKKEQSF ANYIVQLNEK GYIFHQENFQ LSEETKLIHE  180
QNLELKNKLY ALNGSTTGAT CYHPRQSIYE KY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-19183177MEF2C
5f28_B9e-19183177MEF2C
5f28_C9e-19183177MEF2C
5f28_D9e-19183177MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171942.11e-109agamous-like MADS-box protein AGL21
SwissprotQ9SZJ62e-64AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A446SLG01e-155A0A446SLG0_TRITD; Uncharacterized protein
STRINGTraes_5AS_E9E60BA43.21e-157(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-65AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]