PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_096B0BDA8.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 546aa MW: 55848.1 Da PI: 9.4264

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_096B0BDA8.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H Traes_5BL_096B0BDA8.2 66 FVCEVCGKGFQREQNLQLHRRGH 88 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.66E-7	65	88	No hit	No description
SMART	SM00355	0.0027	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.759	66	88	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.9E-6	66	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	310	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-4	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.66E-7	137	162	No hit	No description
SMART	SM00355	210	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MAAASSAPFF GLSDAQMQPL MPAQQPPAPA AAAPAPKKKR NQPGNPNPDA EVIALSPRSL 60 MATNRFVCEV CGKGFQREQN LQLHRRGHNL PWKLKQKNPK ETRRRVYLCP EPTCVHHDPA 120 RALGDLTGIK KHYCRKHGEK KWKCDKCAKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 180 DSFITHRAFC DALAQESARL PPIGAGMYGG PGNMALSNLS VLAPQMAGGF PDQSGHHSSA 240 SAIDVLNLGG GGGNAGQFEH LMPSSSGSSM FRSQAANSSP FYMGGGAAQD FAEDDVHRSH 300 GNQGSLLQGK SPAAFDGLMQ LPDQHQGSGG GNGNNNLLNL GFFSGNGNGG GQDSRLVFQN 360 QYNGSAGNGS SSNGNGENGG MVASGSILGG GGGGFPSLYS SSEAGGGLPQ MSATALLQKA 420 AQMGATTSSH NAGAGGAGLL RGPGMRGGSG EGGSSAAAAA ASERQSFHDL IMNSLGSGSG 480 ASATTGGRAG AFGSGGGFPV DDGKLSTRDF LGVGPGGVVQ AGMGPPRRHS GGAGLHMGSL 540 DPAELK

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MAAASSAPFF GLSDAQMQPL MPAQQPPAPA AAAPAPKKKR NQPGNPNPDA EVIALSPRSL  60
MATNRFVCEV CGKGFQREQN LQLHRRGHNL PWKLKQKNPK ETRRRVYLCP EPTCVHHDPA  120
RALGDLTGIK KHYCRKHGEK KWKCDKCAKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAQESARL PPIGAGMYGG PGNMALSNLS VLAPQMAGGF PDQSGHHSSA  240
SAIDVLNLGG GGGNAGQFEH LMPSSSGSSM FRSQAANSSP FYMGGGAAQD FAEDDVHRSH  300
GNQGSLLQGK SPAAFDGLMQ LPDQHQGSGG GNGNNNLLNL GFFSGNGNGG GQDSRLVFQN  360
QYNGSAGNGS SSNGNGENGG MVASGSILGG GGGGFPSLYS SSEAGGGLPQ MSATALLQKA  420
AQMGATTSSH NAGAGGAGLL RGPGMRGGSG EGGSSAAAAA ASERQSFHDL IMNSLGSGSG  480
ASATTGGRAG AFGSGGGFPV DDGKLSTRDF LGVGPGGVVQ AGMGPPRRHS GGAGLHMGSL  540
DPAELK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	138	200	3	65	Zinc finger protein JACKDAW
5b3h_F	2e-34	138	200	3	65	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00256	DAP	Transfer from AT2G02080	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354562	0.0	AK354562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008H21.
GenBank	AK357401	0.0	AK357401.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052H09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188927.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_020188928.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_020188929.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_020188931.1	0.0	protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q8GYC1	1e-118	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	A0A3B6LS44	0.0	A0A3B6LS44_WHEAT; Uncharacterized protein
STRING	Traes_5BL_096B0BDA8.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.2	1e-111	C2H2-like zinc finger protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]