PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_0C3609EF0.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 244aa    MW: 26005 Da    PI: 4.9605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_0C3609EF0.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.4e-174597155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr++ + grWv+e+r+p ++g  +r +lg++ tae Aa+a +aa+++l g
  Traes_5BL_0C3609EF0.2 45 PVYRGVRRRGNAGRWVCEVRVPGKRG--ARLWLGTYLTAEAAARANDAAMLALGG 97
                           68*******************95544..**********************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-124597IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1646107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-2546108IPR001471AP2/ERF domain
SMARTSM003803.8E-1646112IPR001471AP2/ERF domain
PROSITE profilePS5103221.03546106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDMGMDLSSS SPSSSVSSTP EHASGRASPA KRPTGRTKFR ETRHPVYRGV RRRGNAGRWV  60
CEVRVPGKRG ARLWLGTYLT AEAAARANDA AMLALGGRSA RCLNFADSAW LLAVPSALSN  120
LADVRRAALQ AVADFQRREA ANGLIARTVA KEAPSSAPAQ SSSESDSADS SETSEASADG  180
EFEVLATMDI DMFSRLDLFP EMDLGSYYVS LAEALLMDPP STAAIMDAYW DNGDGGADVA  240
LWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9519510.0AY951951.1 Triticum monococcum CRT/DRE binding factor 13 (CBF13) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167750.11e-135dehydration-responsive element-binding protein 1H-like
RefseqXP_020179850.11e-135dehydration-responsive element-binding protein 1H-like
SwissprotA2Z3892e-65DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLA0A3B6LQW51e-174A0A3B6LQW5_WHEAT; Uncharacterized protein
STRINGTraes_5BL_0C3609EF0.21e-174(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-30C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]