PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_199A847E4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 221aa    MW: 23956.2 Da    PI: 12.1564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_199A847E4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.18.1e-174192255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr++ + g+Wv+e+r+p   g k  r +lg+f tae+Aa+a++aa ++l g
  Traes_5BL_199A847E4.1 41 LYRGVRRRGRVGQWVCEVRVP---GvKGSRLWLGTFTTAEMAARAHDAAVLALSG 92
                           69******************9...8777*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-104091IPR001471AP2/ERF domain
SMARTSM003804.5E-2141106IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1941102IPR016177DNA-binding domain
PROSITE profilePS5103221.00841100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2841102IPR001471AP2/ERF domain
PRINTSPR003673.0E-54253IPR001471AP2/ERF domain
CDDcd000181.61E-1554102No hitNo description
PRINTSPR003673.0E-56682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDVADAASKS GHQEQGHRTV SSEPPKRPAG RTKFRETRHP LYRGVRRRGR VGQWVCEVRV  60
PGVKGSRLWL GTFTTAEMAA RAHDAAVLAL SGRAACLNFA DSAWRMLPVL AAGSFGFGSA  120
REIKLAVSRR RRRVPAAAEY SSSRVSNGGA DRQPEQLSVL HVVRRPAGAR RGALVWRHGC  180
RVVLRQLGAG DARGAAGRQS EAGGRRADGR RDTDAAMELF V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0287810.0EF028781.1 Triticum aestivum CBFIVd-B4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167760.13e-78dehydration-responsive element-binding protein 1B-like
TrEMBLA0A3B6LQM21e-154A0A3B6LQM2_WHEAT; Uncharacterized protein
STRINGTraes_5BL_199A847E4.11e-154(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.17e-27dehydration response element B1A
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]