PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_19F383CC71.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 274aa    MW: 30168.6 Da    PI: 6.3521
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_19F383CC71.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.8e-34102188389
                     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                              ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l ++s  +a ++ e+++ss s+  +++g
  Traes_5BL_19F383CC71.1 102 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDQLGFDKASKTVDWLLTQSKPAIDRLSESSRLNAARAgEDGMSSLSSV-EREG 187
                             689************************************************************7766655554444443333.2222 PP

                     TCP  89 k 89 
                             +
  Traes_5BL_19F383CC71.1 188 R 188
                             2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.334103161IPR017887Transcription factor TCP subgroup
PfamPF036341.9E-33103181IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLPYHPNPHG FWISREPPAQ VPNPASGFAV APPAHLDHQI QHYDHFFPGH GNQFNSETLE  60
AVLMRPRPPA PPPAEMPPAN EARTGAVQAA GTGHARARKR PFRTDRHSKI RTAQGVRDRR  120
MRLSLDVARD FFALQDQLGF DKASKTVDWL LTQSKPAIDR LSESSRLNAA RAGEDGMSSL  180
SSVEREGRRL KETELATGSG KGAADVEKAM RARGGGTSVL MEHRREMNGG LMSASMTGGE  240
YYYDLGEMMC INAGECDDDG EYDEDGDFLD GMQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050932e-77AP005093.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1294_G06.
GenBankAP0149652e-77AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankEU7024072e-77EU702407.1 Oryza sativa Japonica Group putative TCP transcription factor (DP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173868.11e-177transcription factor TCP18-like
TrEMBLA0A3B6LMB90.0A0A3B6LMB9_WHEAT; Uncharacterized protein
TrEMBLA0A446U9S80.0A0A446U9S8_TRITD; Uncharacterized protein
STRINGTraes_5BL_19F383CC71.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.23e-27TCP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]