PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_2111E509E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 177aa MW: 19309.3 Da PI: 9.7048

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_2111E509E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76.6	5.9e-24	9	91	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++w+fF +r++++ +g r+ r+t sgyWkatg+ v+s+ +++++g+k+t+vfy+grap+g kt+W m+ey++ Traes_5BL_2111E509E.1 9 DAEQWFFFYPRAERELRGGRPARTTPSGYWKATGSPSGVFSSssssaaagNSKVIGVKRTMVFYQGRAPTGAKTTWKMNEYKA 91 5679**********************************99888888877777*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.065	1	110	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-25	7	109	IPR003441	NAC domain
Pfam	PF02365	1.1E-11	12	90	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAGEASVQDA EQWFFFYPRA ERELRGGRPA RTTPSGYWKA TGSPSGVFSS SSSSAAAGNS 60 KVIGVKRTMV FYQGRAPTGA KTTWKMNEYK AVAADNDLRN EFSVCRLYIS TGTLRSFDRR 120 PLNTSGNGQA AARRHVPSAA NTASIGQADN YQGWSTLVTT STTDVDNFCF DMDFNQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-16	11	108	71	163	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-16	11	108	71	163	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-16	11	108	71	163	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-16	11	108	71	163	NO APICAL MERISTEM PROTEIN
3swm_A	8e-16	11	108	74	166	NAC domain-containing protein 19
3swm_B	8e-16	11	108	74	166	NAC domain-containing protein 19
3swm_C	8e-16	11	108	74	166	NAC domain-containing protein 19
3swm_D	8e-16	11	108	74	166	NAC domain-containing protein 19
3swp_A	8e-16	11	108	74	166	NAC domain-containing protein 19
3swp_B	8e-16	11	108	74	166	NAC domain-containing protein 19
3swp_C	8e-16	11	108	74	166	NAC domain-containing protein 19
3swp_D	8e-16	11	108	74	166	NAC domain-containing protein 19
3ulx_A	1e-15	4	108	62	166	Stress-induced transcription factor NAC1
4dul_A	8e-16	11	108	71	163	NAC domain-containing protein 19
4dul_B	8e-16	11	108	71	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185458.1	1e-106	NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	4e-45	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A446U233	1e-119	A0A446U233_TRITD; Uncharacterized protein
STRING	Traes_5BL_2111E509E.1	1e-129	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-42	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]