PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_2C77A04C2.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 145aa MW: 17037.7 Da PI: 10.3678

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_2C77A04C2.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.3	1.1e-12	6	69	30	90
FAR1 30 krtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++f+C +g ree++ +k+r++ + t +gC+a++ +++++dg++ev +++ +H+H+l+ Traes_5BL_2C77A04C2.2 6 WKRFTCAWKGWREEKTVLndhVKKSRKKVKLTSCGCEAMISLRRRDDGNYEVLRFVCQHTHQLV 69 689*******9987666667888889999*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-10	6	69	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MVIPVWKRFT CAWKGWREEK TVLNDHVKKS RKKVKLTSCG CEAMISLRRR DDGNYEVLRF 60 VCQHTHQLVS TNKKQFTRTN REVSSELRST FLTCHSIDEP LPKKLAYTNW DQERYPEKLV 120 SDRGSKKLIA FVTMPHTMIT QPSGH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190907.1	2e-27	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020190908.1	2e-27	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020190909.1	2e-27	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A452XTC2	4e-28	A0A452XTC2_AEGTS; Uncharacterized protein
STRING	Traes_5BL_2C77A04C2.2	1e-106	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15006	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-08	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]