PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_310D4BA71.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 76aa    MW: 8396.57 Da    PI: 11.3264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_310D4BA71.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-171260255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            y+G+r  ++ g+Wv+eIr+p+    + +r++lg+f tae+Aa a++ a+ +l+g
  Traes_5BL_310D4BA71.1 12 FYRGIR--SRYGKWVSEIREPR----KaRRIWLGTFPTAEMAAVAYDVAAHALRG 60
                           79***5..779*********94....36************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.1E-16374IPR017392AP2/ERF transcription factor ERF/PTI6
PROSITE profilePS5103219.9811268IPR001471AP2/ERF domain
SMARTSM003804.9E-261274IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-181268IPR016177DNA-binding domain
PfamPF008471.2E-81360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-271368IPR001471AP2/ERF domain
CDDcd000185.22E-231368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MSGHGSSGRH PFYRGIRSRY GKWVSEIREP RKARRIWLGT FPTAEMAAVA YDVAAHALRG  60
VDAELNFPGL AATRPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-16168372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557518e-59EU955751.1 Zea mays clone 1544743 ap2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147914.15e-46ethylene-responsive transcription factor ERF025-like
SwissprotQ9SJR03e-28ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A3B6LT657e-48A0A3B6LT65_WHEAT; Uncharacterized protein
TrEMBLA0A446ULZ37e-48A0A446ULZ3_TRITD; Uncharacterized protein
STRINGTraes_5BL_310D4BA71.18e-49(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.19e-22ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]