PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_34CEC5885.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 276aa    MW: 30115.7 Da    PI: 6.1701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_34CEC5885.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09112159455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+  Er RR+ri +++  L++l+P +    +k   Ka iL + ++Y++sLq
  Traes_5BL_34CEC5885.2 112 SHSLSERVRRERISERMRMLQSLVPGC----DKVTGKALILDEIINYVQSLQ 159
                            799***********************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.69E-12106163No hitNo description
SuperFamilySSF474591.31E-17106175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-17108173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6112159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-10114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNAGS FLLCHGNPED AAASLEGSSG VLDTPLVATA SVEKKMKPKE  60
DTASLNSAHS KETKESTRKR GGKKQGKEVD EEEEEPKGYI HVRARRGQAT DSHSLSERVR  120
RERISERMRM LQSLVPGCDK VTGKALILDE IINYVQSLQN QVEFLSMRIA SLSPVVYGFG  180
MESGAAFSDQ SQKIEGMFHE AAALPTGPPM NRSSSPAPSQ AMMDTGTSSS SPPYSLQGTQ  240
DNGSSSSSYM MQTVGEPRHE LFNQVMFSNY MCSFQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654680.0AK365468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166246.10.0transcription factor bHLH137-like
TrEMBLA0A3B6LPU40.0A0A3B6LPU4_WHEAT; Uncharacterized protein
STRINGTraes_5BL_34CEC5885.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-34bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]