PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_38DFDFE41.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 253aa MW: 28902.8 Da PI: 9.2506

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_38DFDFE41.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.3	6.2e-53	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+ Traes_5BL_38DFDFE41.1 14 LLPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGT 100 579*************************.89***********8888999***************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl Traes_5BL_38DFDFE41.1 101 DRPIYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 **956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-58	10	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.046	14	172	IPR003441	NAC domain
Pfam	PF02365	4.0E-26	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDERSDMDKL EEALLPGFRF HPTDEELVGF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP 60 KLASSGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLTDPSLP KVPIDKNIPA NDAWAICRIF KKPSSMAQRA 180 LSHSWGPQST ATIEPDLLSA LQSIQASHFA FESSPCSAEV AIPVSRLNSQ HYFHEQQQQK 240 PNSSQNGSSY PPE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-55	13	175	16	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-55	13	175	16	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-55	13	175	16	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-55	13	175	16	168	NO APICAL MERISTEM PROTEIN
3swm_A	8e-55	13	175	19	171	NAC domain-containing protein 19
3swm_B	8e-55	13	175	19	171	NAC domain-containing protein 19
3swm_C	8e-55	13	175	19	171	NAC domain-containing protein 19
3swm_D	8e-55	13	175	19	171	NAC domain-containing protein 19
3swp_A	8e-55	13	175	19	171	NAC domain-containing protein 19
3swp_B	8e-55	13	175	19	171	NAC domain-containing protein 19
3swp_C	8e-55	13	175	19	171	NAC domain-containing protein 19
3swp_D	8e-55	13	175	19	171	NAC domain-containing protein 19
4dul_A	6e-55	13	175	16	168	NAC domain-containing protein 19
4dul_B	6e-55	13	175	16	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184786.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	1e-101	FEZ_ARATH; Protein FEZ
TrEMBL	A0A453KYM9	0.0	A0A453KYM9_AEGTS; Uncharacterized protein
STRING	Traes_5BL_38DFDFE41.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-104	NAC family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]