PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_3A9D3CEEF.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 201aa    MW: 21777.5 Da    PI: 9.4177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_3A9D3CEEF.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056133155123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F     L  H+r+H
  Traes_5BL_3A9D3CEEF.2 133 HECHICGLGFEMGQALGGHMRRH 155
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.88983110IPR007087Zinc finger, C2H2
SMARTSM003551.183105IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-983107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-883155No hitNo description
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-5129157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.827133160IPR007087Zinc finger, C2H2
SMARTSM003550.49133155IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-11133158IPR007087Zinc finger, C2H2
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MPRSQSCETK YLQQKSTRAH TDPAMGAAVK RAREEEPVSL ALALTTDSAA SSTTSADSAG  60
APAASRKRAR RGRVVATSGE GEFVCKTCSR AFATFQALGG HRTSHLRGRH GLELGVGVAR  120
AIKERKRQEE KPHECHICGL GFEMGQALGG HMRRHREEMA LRGADDGDQW VWRGVGALDQ  180
EAVGRQTAAN YEPPVLLELF V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4082240.0EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198423.11e-117zinc finger protein ZAT8-like
TrEMBLA0A3B6LWN01e-144A0A3B6LWN0_WHEAT; Uncharacterized protein
TrEMBLA0A446UTV21e-144A0A446UTV2_TRITD; Uncharacterized protein
STRINGTraes_5BL_3A9D3CEEF.21e-145(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-19C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]