PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_3B50B6963.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 136aa    MW: 14710.8 Da    PI: 9.8065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_3B50B6963.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000414264123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C++sF++   L  H  +H
  Traes_5BL_3B50B6963.1 42 FVCKTCSRSFPSFQALGGHRTSH 64
                           89**********99998888777 PP
2zf-C2H215.83.9e-0594116123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cg  F +   L  H+r+H
  Traes_5BL_3B50B6963.1  94 HQCHVCGLEFETGQALGGHMRRH 116
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7234269IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-742116No hitNo description
SMARTSM003550.254264IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-114266IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139121.7E-1193118IPR007087Zinc finger, C2H2
PROSITE profilePS501579.18294121IPR007087Zinc finger, C2H2
SMARTSM003550.02894116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVSSMRQYTD QAEAPLSLSL SLSLGAIADR SKKMRRGADG EFVCKTCSRS FPSFQALGGH  60
RTSHLRGRNG LALGLAAGYD QPGSKKITEQ KQAHQCHVCG LEFETGQALG GHMRRHRDDA  120
VATTAQAPLV LLQLFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044332e-36AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBankAK1196902e-36AK119690.1 Oryza sativa Japonica Group cDNA clone:002-157-B05, full insert sequence.
GenBankAP0149592e-36AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2864732e-36AY286473.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP15 mRNA, complete cds.
GenBankAY3058642e-36AY305864.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP37 (ZFP37) mRNA, complete cds.
GenBankCP0126112e-36CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8331402e-36CT833140.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA212G11, full insert sequence.
GenBankEU2808992e-36EU280899.1 Oryza sativa Indica Group zinc finger protein (MM874) gene, complete cds; mitochondrial.
GenBankEU2809002e-36EU280900.1 Oryza sativa Japonica Group zinc finger protein (MM874-2) gene, complete cds.
GenBankHQ8588462e-36HQ858846.1 Oryza sativa Japonica Group isolate UT1603 C2H2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198422.14e-71zinc finger protein ZAT8-like
RefseqXP_020199617.14e-71zinc finger protein ZAT8-like
SwissprotQ424534e-19ZAT7_ARATH; Zinc finger protein ZAT7
TrEMBLA0A3B6LWN51e-94A0A3B6LWN5_WHEAT; Uncharacterized protein
TrEMBLA0A446UTV01e-94A0A446UTV0_TRITD; Uncharacterized protein
STRINGTraes_5BL_3B50B6963.12e-95(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.13e-21C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]