PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_3BA7EA9A3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 208aa    MW: 24189.5 Da    PI: 8.6212
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_3BA7EA9A3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.63.8e-30361673128
                    NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksg 81 
                            +G+ FhPt++el+ ++L++k+ ++ ++ +        +i++  +i++++P++Lp  v+++ +  yfF++++++y+tgkrk+r +  + 
  Traes_5BL_3BA7EA9A3.1  36 AGLGFHPTEQELL-DHLRAKLMDDGINSHPligefitTIQDEdGICHTHPENLP-GVTKDGSAKYFFHRTSNAYTTGKRKRRqIQGEL 121
                            799**********.99*****99995443244455445887757**********.556677899******************445577 PP

                    NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +W++tgk  +v++ +g+++g kk +v+y+ r+++ e+ +Wvmh++++
  Traes_5BL_3BA7EA9A3.1 122 TWHQTGKGCPVTV-DGRVMGYKKFMVLYNWRQHRRESDKWVMHQFHI 167
                            8************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.55434185IPR003441NAC domain
SuperFamilySSF1019419.02E-3035184IPR003441NAC domain
PfamPF023659.2E-1436167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MIFENFIQLA EGTCGAAKEE SYAFLKSLWD NRMPMAGLGF HPTEQELLDH LRAKLMDDGI  60
NSHPLIGEFI TTIQDEDGIC HTHPENLPGV TKDGSAKYFF HRTSNAYTTG KRKRRQIQGE  120
LTWHQTGKGC PVTVDGRVMG YKKFMVLYNW RQHRRESDKW VMHQFHIGER WDEEGELVVS  180
KIFCHPAKEK EKARSSARRS TRETMVRY
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398103.11e-54NAC domain-containing protein 75 isoform X4
RefseqXP_020691134.13e-55NAC domain-containing protein 75
SwissprotO494598e-54NAC73_ARATH; NAC domain-containing protein 73
SwissprotQ9M0F87e-52NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A060A5N85e-54A0A060A5N8_BOENI; NAC domain-containing protein (Fragment)
TrEMBLM0UD692e-53M0UD69_MUSAM; Uncharacterized protein
STRINGTraes_5BL_3BA7EA9A3.11e-157(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.14e-56NAC domain containing protein 73
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  5. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]