PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_4317E525B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 99aa    MW: 11280.2 Da    PI: 10.5404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_4317E525B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-132873655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +++Er RR +i +++ +L+el+P+      k  + +++L +Av+YIk+Lq
  Traes_5BL_4317E525B.2 28 SIAERVRRTKISERIRKLQELVPNM----EKQTNTSDMLDLAVDYIKELQ 73
                           689*********************6....4679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9072272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-172585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-102677No hitNo description
Gene3DG3DSA:4.10.280.102.2E-162782IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-112878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-102873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
AIEKFLQFQD SVPCKIRAKR GCATHPRSIA ERVRRTKISE RIRKLQELVP NMEKQTNTSD  60
MLDLAVDYIK ELQMQVKVMK DGRASCTCAA GRPPRSFAS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3715041e-143AK371504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2135O23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177240.14e-63transcription factor bHLH130-like
SwissprotQ66GR34e-46BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A3B6LNX35e-65A0A3B6LNX3_WHEAT; Uncharacterized protein
TrEMBLA0A446T6H94e-65A0A446T6H9_TRITD; Uncharacterized protein
TrEMBLA0A446UDR95e-65A0A446UDR9_TRITD; Uncharacterized protein
STRINGTraes_5BL_4317E525B.29e-68(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]