PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_462E6AA25.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 898aa MW: 98677.1 Da PI: 6.9077

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_462E6AA25.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	582	632	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl +l++yF++++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++ Traes_5BL_462E6AA25.2 582 EKTVSLPVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGINRWPSRKIKKV 632 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.45	571	652	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-24	585	632	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-20	790	883	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-23	797	881	No hit	No description
SMART	SM00666	1.4E-20	800	883	IPR000270	PB1 domain
PROSITE profile	PS51745	19.144	800	883	IPR000270	PB1 domain
CDD	cd06407	6.36E-40	801	881	No hit	No description
Pfam	PF00564	1.2E-15	801	881	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MMCSPLPPSP CNPNTNASTS DTKIFPRPPP PSNTWFTQDA LLGFEQERRS SEGSFTCMEG 60 GDAPPGISMG RAMSSEGDLD LLEQLLSGDN AWLEVAPNTS RSPNFFASPS TFLSDATTTT 120 TMPASTNNAL WIQSGSSTVR ERLDQALAYI KEMQRDVGML VQLWVPIKSG EGQLVLSTSG 180 QPFTLDETSE RLRQFREVST QYQFSADVAS ESSPIGLPGR VFIGKLPEWS PDVRYFTSYE 240 YPRVNHAQYL DVHGTMGLPV FEKGSYSCLG VMELIMTRQK LNFTSEINNI CSALQAVNLR 300 STEVSNIPRA TKFNSASYKD ALPEILEVLR AACVTHKLPL AQTWVTCAQQ GKRGSRHSDE 360 NYRHCISTID AACYVNDPQM QNFHESCSDH HLLHEQGVVG KAFTTNQPCF LPDIGSSTKM 420 EYPLSHHAKI FNLKGAVAIR LRCTRTGTAD FVLEFFLPTD CEALEEQKAV LDSLSGTMRS 480 ACRTLRVVTD KEMADEAMLE VNELNSFGPQ GKNKVEELSF GDQATEHREE ASWTSLAGTS 540 KESDLAELSI HGMLSPVGQG LSPAGAQTSA QGSKGKRRTK TEKTVSLPVL RQYFAGSLKD 600 AARSLGVCPT TLKRICRQHG INRWPSRKIK KVDHSLRKLQ QIIDSVHGGE TAFQLNTLYK 660 DLTNTSVSSD NNLSGSVTVP PHKQSNLTDF EGHRHHRLSS IVPSTSHSHS SCSQSSDSSP 720 SSCSGGSTKH PPQAGVDFLM SGNPVNHSPV QTLQTENASI RGHFPVQEAP DLLHNLNQQA 780 LGGQHSSRSP SPPKQNADAG MRIKATFGSE KVRFRLKPEC SFQELKQEMA RRLSIVDTSF 840 LIVKYLDDDL EWVLMTCDAD LQECLHVYKL ANLQTVKISV HLAPIPEARV TIGHTGLS

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MMCSPLPPSP CNPNTNASTS DTKIFPRPPP PSNTWFTQDA LLGFEQERRS SEGSFTCMEG  60
GDAPPGISMG RAMSSEGDLD LLEQLLSGDN AWLEVAPNTS RSPNFFASPS TFLSDATTTT  120
TMPASTNNAL WIQSGSSTVR ERLDQALAYI KEMQRDVGML VQLWVPIKSG EGQLVLSTSG  180
QPFTLDETSE RLRQFREVST QYQFSADVAS ESSPIGLPGR VFIGKLPEWS PDVRYFTSYE  240
YPRVNHAQYL DVHGTMGLPV FEKGSYSCLG VMELIMTRQK LNFTSEINNI CSALQAVNLR  300
STEVSNIPRA TKFNSASYKD ALPEILEVLR AACVTHKLPL AQTWVTCAQQ GKRGSRHSDE  360
NYRHCISTID AACYVNDPQM QNFHESCSDH HLLHEQGVVG KAFTTNQPCF LPDIGSSTKM  420
EYPLSHHAKI FNLKGAVAIR LRCTRTGTAD FVLEFFLPTD CEALEEQKAV LDSLSGTMRS  480
ACRTLRVVTD KEMADEAMLE VNELNSFGPQ GKNKVEELSF GDQATEHREE ASWTSLAGTS  540
KESDLAELSI HGMLSPVGQG LSPAGAQTSA QGSKGKRRTK TEKTVSLPVL RQYFAGSLKD  600
AARSLGVCPT TLKRICRQHG INRWPSRKIK KVDHSLRKLQ QIIDSVHGGE TAFQLNTLYK  660
DLTNTSVSSD NNLSGSVTVP PHKQSNLTDF EGHRHHRLSS IVPSTSHSHS SCSQSSDSSP  720
SSCSGGSTKH PPQAGVDFLM SGNPVNHSPV QTLQTENASI RGHFPVQEAP DLLHNLNQQA  780
LGGQHSSRSP SPPKQNADAG MRIKATFGSE KVRFRLKPEC SFQELKQEMA RRLSIVDTSF  840
LIVKYLDDDL EWVLMTCDAD LQECLHVYKL ANLQTVKISV HLAPIPEARV TIGHTGLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358600	0.0	AK358600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1079K24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196252.1	0.0	protein NLP1-like isoform X1
TrEMBL	A0A3B6LRV1	0.0	A0A3B6LRV1_WHEAT; Uncharacterized protein
TrEMBL	A0A446UIW6	0.0	A0A446UIW6_TRITD; Uncharacterized protein
STRING	Traes_5BL_462E6AA25.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]