PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_46BDE583B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 316aa    MW: 34024.9 Da    PI: 7.4088
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_46BDE583B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05131150120
                            EEETTTTEEESSHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                            ++C  C+k+F+r  n++ H+
  Traes_5BL_46BDE583B.1 131 FSCAVCNKTFNRFNNMQMHM 150
                            89*****************9 PP
2zf-C2H213.90.00016222244123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y C  Cgk+F  + + ++H +++
  Traes_5BL_46BDE583B.1 222 YACRRCGKRFAVRGDWRTHEKNC 244
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.36E-5126152No hitNo description
PROSITE profilePS5015710.055131158IPR007087Zinc finger, C2H2
SMARTSM003550.64131153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-5131150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SMARTSM00355220185217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.48E-6208242No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6208242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558222242IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704222242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MLLLSLWPPG HHHDAAASSS ACSSHSVATA AHSTASSPWF NPSHVYHGCG VGGGGGSNGS  60
FLFHEQDPNV SVSLSIAPPS PCGANLAPCG GSYAYAAPVA PPSAATAGGN QVPSQYWIPS  120
AAEILVGSTQ FSCAVCNKTF NRFNNMQMHM WGHGSQYRKG SESLRGAVTV GTAAPPPSLM  180
RLPCYCCAEG CRNNIDHPRA RPLKDFRTLQ THYRRKHGAR PYACRRCGKR FAVRGDWRTH  240
EKNCGKLWFC VCGSDFKHKR SLKDHVRSFG GGHAPHIIES VAVDEDEDED DEHDDGDLHL  300
YDENGNPGDG TDMVLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732990.0AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172443.10.0zinc finger protein WIP6-like
SwissprotQ9FX685e-97ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A3B6LL210.0A0A3B6LL21_WHEAT; Uncharacterized protein
STRINGTraes_5BL_46BDE583B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.13e-97C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]