PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_4CD61BF76.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GeBP
Protein Properties Length: 258aa    MW: 28796.4 Da    PI: 9.9275
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_4CD61BF76.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57396.13.5e-306103297
                 DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                            +++rlws  De+++L+Gl +++ak g+   +++di ++++ ++ ++s++vs++ql++K+rrLK+K++   ++ak+g+e++++++hd++
  Traes_5BL_4CD61BF76.1   6 RPSRLWSHGDELLILRGLATYRAKSGVlpGSTNDIGKLHSHIRAQLSVRVSTTQLSDKVRRLKQKYQLLATRAKNGREQELHTPHDRS 93 
                            679************************877888******************************************************* PP

                 DUF573  88 ifelskkiWg 97 
                            i+e++kk+Wg
  Traes_5BL_4CD61BF76.1  94 IYEHAKKVWG 103
                            *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-268103IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
PDPLKRPSRL WSHGDELLIL RGLATYRAKS GVLPGSTNDI GKLHSHIRAQ LSVRVSTTQL  60
SDKVRRLKQK YQLLATRAKN GREQELHTPH DRSIYEHAKK VWGLVGSGGG DGGGSGYENY  120
GGGDSDELQY SGDSDDDMES QRDDRYHIKN RKVRPITAAN GNGIGLGAVN ANGRGKSGLE  180
KGKDAYPYLW ETVEELSKEH PSGAAFKKAF EVLEGSKVRA IEEKLRRFRL MEIRQQLRRM  240
DLMKETVRMV LDALESAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705900.0AK370590.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112N22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169455.10.0STOREKEEPER protein-like
TrEMBLA0A3B6LLD20.0A0A3B6LLD2_WHEAT; Uncharacterized protein
TrEMBLA0A446UBK10.0A0A446UBK1_TRITD; Uncharacterized protein
TrEMBLA0A446UBM00.0A0A446UBM0_TRITD; Uncharacterized protein
STRINGTraes_5BL_4CD61BF76.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.13e-15DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]