PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_4D65B66E2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 284aa    MW: 30580 Da    PI: 6.8803
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_4D65B66E2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.2e-21108157255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Traes_5BL_4D65B66E2.1 108 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 157
                            59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.03E-31107167No hitNo description
SMARTSM003801.5E-35108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.354108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-33108167IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-23108167IPR016177DNA-binding domain
PRINTSPR003672.4E-11109120IPR001471AP2/ERF domain
PfamPF008476.9E-15109157IPR001471AP2/ERF domain
PRINTSPR003672.4E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAAAIDLSGE DLVRALEPFI REASAPLPLH SHLSPTSPFS FPHAAYSGYP YGVQAQAQTE  60
LSPAQMHYIQ ARLHLQRQTG QPGQLGPRSQ PMKPASVAAA TPPRPQKLYR GVRQRHWGKW  120
VAEIRLPRNR TRLWLGTFDT AEEAALAYDQ AAYRLRGDAA RLNFPDNAAS RGPLHASVDA  180
KLQTLCQNIT ASKNAKKSAS VSASTAAATS STPTSNCSSP SSDEASSSLE SAESSPSPAA  240
TTAADVPEMQ QLDFSEAPWD EAACFALTKY PSYEIDWDSL LATN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20107165463ATERF1
3gcc_A2e-20107165463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090750.0BT009075.1 Triticum aestivum clone wip1c.pk004.o24:fis, full insert mRNA sequence.
GenBankDQ3344070.0DQ334407.1 Triticum aestivum drought-responsive factor-like transcription factor DRFL1a (DRFL1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174354.11e-175ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A1S5WIH30.0A0A1S5WIH3_WHEAT; WXPL1B transcription factor
TrEMBLA0A446U8N60.0A0A446U8N6_TRITD; Uncharacterized protein
STRINGTraes_5BL_4D65B66E2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-41related to AP2 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]