PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_4DEC298F9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 153aa    MW: 17502.9 Da    PI: 10.3191
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_4DEC298F9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY177.29.8e-55113131170
                  YABBY  31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.senedeevprvppvir 117
                            ++++vtvrCGhCtsllsvnl+   q  ++++h       +++e+ k ++ +++ n+  + ++s+++  +++ +++++e++ ++ p   
  Traes_5BL_4DEC298F9.1   1 MLNIVTVRCGHCTSLLSVNLRGLIQSPPVQDH-------SQVENFKAHNISFRGNYPDYGTSSKYRMPMMFsTKSDQEHMLHMRP--- 78 
                            579****************************9.......7899***************999998887767734556667777655... PP

                  YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                             PekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+ihfgl
  Traes_5BL_4DEC298F9.1  79 APEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPNIHFGL 131
                            6**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-521131IPR006780YABBY protein
SuperFamilySSF470957.2E-877125IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-580125IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MLNIVTVRCG HCTSLLSVNL RGLIQSPPVQ DHSQVENFKA HNISFRGNYP DYGTSSKYRM  60
PMMFSTKSDQ EHMLHMRPAP EKRQRVPSAY NRFIKEEIRR IKTNNPDISH REAFSTAAKN  120
WAHFPNIHFG LGSNESSKKL DEAIAAPIPQ KVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0995850.0EU099585.1 Triticum aestivum YABBY2 (YAB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155667.11e-110protein YABBY 2-like isoform X1
SwissprotQ10FZ73e-87YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A453LQ311e-109A0A453LQ31_AEGTS; Uncharacterized protein
STRINGTraes_5BL_4DEC298F9.11e-113(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-48YABBY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]