PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_590637F31.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 267aa    MW: 29794.1 Da    PI: 10.2684
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_590637F31.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.52.3e-25205267163
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                            rW+k ev+aLi++r++++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk
  Traes_5BL_590637F31.1 205 RWPKTEVHALIQLRSNLDMRYQEAGPKGPLWEEISAGMRRMGYNRSSKRCKEKWENINKYFKK 267
                            8*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001637264IPR001005SANT/Myb domain
PROSITE profilePS500907.41204262IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-4204261IPR009057Homeodomain-like
PfamPF138376.7E-17204267No hitNo description
CDDcd122033.30E-29205267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMRFFEGLMK QVMERQEAMQ QRFLEAIEKR EQDRMIREEA WRRQEMARLA REQEILGQER  60
AMAATRDAAV LSFIQKITGQ TIPMPSIAAQ AITFMPPPPP SQPHATPIAY SAAPVPARPS  120
SSQPPATHSP PQPQPSPRQQ KPPTMPPVTP QPHKSPAPAT PQLQQQAPVV NSSCMDIVVA  180
PPSEAPHDSS GYDGSGGGSG PASSRWPKTE VHALIQLRSN LDMRYQEAGP KGPLWEEISA  240
GMRRMGYNRS SKRCKEKWEN INKYFKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544260.0AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05.
GenBankAK3615070.0AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04.
GenBankAK3727130.0AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191229.11e-151trihelix transcription factor GTL1-like isoform X1
RefseqXP_020191230.11e-152trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A446JW530.0A0A446JW53_TRITD; Uncharacterized protein
STRINGTraes_5BL_590637F31.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-33Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]