PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_59AFA4B01.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 239aa MW: 27422.7 Da PI: 9.8981

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_59AFA4B01.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.9	8.7e-49	70	197	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp GfrFhPt+e++++ y +kv + ++ + +i evd++k eP +Lpkk+k +ekewyf++++d+ky g r+nratk+gyWkatgk Traes_5BL_59AFA4B01.1 70 LPSGFRFHPTEEDIITSYPVPKVLNPTFIA-IAIGEVDLNKNEPYELPKKAKMGEKEWYFYCQKDRKYLMGIRTNRATKAGYWKATGK 156 699********************99777.78***********99999******************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ + +l+g+kktLvfykgrap+gekt+Wvmheyrle Traes_5BL_59AFA4B01.1 157 DKEIFHPTPTLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 197 *************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-52	61	201	IPR003441	NAC domain
PROSITE profile	PS51005	46.999	70	216	IPR003441	NAC domain
Pfam	PF02365	1.1E-24	71	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
GFYGKCLADT RILSYLSASS CIPSSLYSFH SCLHLYDRLP YLCHPINHCP ESLLHERPPS 60 SSTTAPTLEL PSGFRFHPTE EDIITSYPVP KVLNPTFIAI AIGEVDLNKN EPYELPKKAK 120 MGEKEWYFYC QKDRKYLMGI RTNRATKAGY WKATGKDKEI FHPTPTLIGM KKTLVFYKGR 180 APRGEKTNWV MHEYRLEISK QPASGPSTAI PKLPPLMHPS RRSVWFAKSS IRTLESRRW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-41	68	196	15	142	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-41	68	196	15	142	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-41	68	196	15	142	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-41	68	196	15	142	NO APICAL MERISTEM PROTEIN
3swm_A	8e-41	68	196	18	145	NAC domain-containing protein 19
3swm_B	8e-41	68	196	18	145	NAC domain-containing protein 19
3swm_C	8e-41	68	196	18	145	NAC domain-containing protein 19
3swm_D	8e-41	68	196	18	145	NAC domain-containing protein 19
3swp_A	8e-41	68	196	18	145	NAC domain-containing protein 19
3swp_B	8e-41	68	196	18	145	NAC domain-containing protein 19
3swp_C	8e-41	68	196	18	145	NAC domain-containing protein 19
3swp_D	8e-41	68	196	18	145	NAC domain-containing protein 19
4dul_A	6e-41	68	196	15	142	NAC domain-containing protein 19
4dul_B	6e-41	68	196	15	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179085.1	2e-89	NAC domain-containing protein 92-like
Swissprot	Q9FK44	1e-65	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A453L064	7e-89	A0A453L064_AEGTS; Uncharacterized protein
STRING	Traes_5BL_59AFA4B01.1	1e-178	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	5e-68	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]