PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_630A8A142.4
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 171aa    MW: 18244.6 Da    PI: 8.816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_630A8A142.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000456486123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cg+ F +   L  H  +H
  Traes_5BL_630A8A142.4 64 FVCKTCGRAFATFQALGGHRTSH 86
                           89**********99998888777 PP
2zf-C2H213.60.0002115137123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C++Cg  F +   L  H+r+H
  Traes_5BL_630A8A142.4 115 HDCHICGLGFETGQALGGHMRRH 137
                            56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-45987IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.89E-66090No hitNo description
PfamPF139121.6E-96488IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6166491IPR007087Zinc finger, C2H2
SMARTSM003550.386486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-6112141No hitNo description
PfamPF139123.2E-10115140IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702115142IPR007087Zinc finger, C2H2
SMARTSM003550.22115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGAGMKRARE EEPAVSLALS LSTDSSASTT TSDNSACAPA AAAAAPRKRA RGGRVVVTSG  60
EGEFVCKTCG RAFATFQALG GHRTSHLRGR HGLELGVGVA RAIRERQRRG DKEPHDCHIC  120
GLGFETGQAL GGHMRRHREE MALDRWFAVS DQEAGHQAAA DRLPVLLELF V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589901e-139AK358990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198412.11e-80zinc finger protein ZAT4-like
RefseqXP_020198415.11e-80zinc finger protein ZAT6-like
TrEMBLA0A3B6LWC31e-119A0A3B6LWC3_WHEAT; Uncharacterized protein
TrEMBLA0A446UTT61e-119A0A446UTT6_TRITD; Uncharacterized protein
STRINGTraes_5BL_630A8A142.41e-119(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-19C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]