PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_63AE36D3A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 132aa    MW: 14674.7 Da    PI: 10.5683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_63AE36D3A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000522143123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cg+ F +   L  H  +H
  Traes_5BL_63AE36D3A.1 21 FVCKTCGRAFETFQALGGHRTSH 43
                           89*********999998888777 PP
2zf-C2H214.10.000137193123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C++Cg  F +   L  H+r+H
  Traes_5BL_63AE36D3A.1 71 HDCHICGLGFETGQALGGHMRRH 93
                           56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.91E-82193No hitNo description
PfamPF139124.4E-102145IPR007087Zinc finger, C2H2
SMARTSM003550.422143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4922148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-46296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.7237198IPR007087Zinc finger, C2H2
PfamPF139124.9E-107196IPR007087Zinc finger, C2H2
SMARTSM003550.227193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MVPRKRARRG RAVATSGEGE FVCKTCGRAF ETFQALGGHR TSHLRGRHGL ELGVGVARAI  60
KQRKRQEEKQ HDCHICGLGF ETGQALGGHM RRHREEMSLS GAMDRWVALS DQEAGHQHAA  120
VDRPPVLLEL FV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198415.16e-85zinc finger protein ZAT6-like
TrEMBLA0A446UUL71e-90A0A446UUL7_TRITD; Uncharacterized protein
STRINGTraes_5BL_63AE36D3A.11e-90(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.13e-20C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]