PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_6647931E2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 244aa    MW: 25573.3 Da    PI: 4.6153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_6647931E2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-164193155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr++ +  rWv+e+r+p ++g  +r +lg++ tae Aa+a +aa+++l g
  Traes_5BL_6647931E2.1 41 PVYRGVRRRGNAERWVCEVRVPGKRG--ARLWLGTYATAEIAARANDAAMLALGG 93
                           68*******************95544..***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-114193IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-1642104IPR016177DNA-binding domain
SMARTSM003804.8E-1642108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-2542104IPR001471AP2/ERF domain
PROSITE profilePS5103220.63942102IPR001471AP2/ERF domain
CDDcd000183.87E-1843104No hitNo description
PRINTSPR003675.1E-54354IPR001471AP2/ERF domain
PRINTSPR003675.1E-56783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGMGLEIPSS SLSSSNENAP GRASAAKRPA GRTKFRETRH PVYRGVRRRG NAERWVCEVR  60
VPGKRGARLW LGTYATAEIA ARANDAAMLA LGGRSAARLN FPDSAWLLAV PSAHSDLADV  120
RRAAVEAVAD LQRREAAGGS ITATAAEEAS CGAPAESSSE SDDAGSSETS KPSADGDFAV  180
PGGMDIEMFS RLDLFPEMDL GSYYASLAEA LLMDPPPVAT GTGAYWDNGE CGEAEGATEF  240
ALWS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1942430.0EU194243.1 Secale cereale CBFIIIc-10 (CBFIIIc-10) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179851.11e-152dehydration-responsive element-binding protein 1H-like
SwissprotA2Z3883e-58DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H
SwissprotQ0J0903e-58DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H
TrEMBLA0A3B6LQN31e-171A0A3B6LQN3_WHEAT; Uncharacterized protein
STRINGTraes_5BL_6647931E2.11e-173(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.14e-28dehydration response element B1A
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]