PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_6C1EFA808.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 100aa    MW: 12006.6 Da    PI: 11.113
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_6C1EFA808.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-0849822154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
                           k +yp++e++++L +++gL+ +q+ +WF N+R +
  Traes_5BL_6C1EFA808.1 49 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 82
                           569*****************************87 PP
2ELK31.63.6e-11324122
                    ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                           ELKh+L+++Y+++L+++++E++
  Traes_5BL_6C1EFA808.1  3 ELKHELKQGYREKLVDIREEIL 24
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037895.5E-7324IPR005539ELK domain
SMARTSM011880.0014324IPR005539ELK domain
PROSITE profilePS5121310.196323IPR005539ELK domain
PROSITE profilePS5007111.5962386IPR001356Homeobox domain
SMARTSM003894.9E-102590IPR001356Homeobox domain
SuperFamilySSF466895.99E-172590IPR009057Homeodomain-like
CDDcd000862.47E-82687No hitNo description
Gene3DG3DSA:1.10.10.602.3E-253087IPR009057Homeodomain-like
PfamPF059204.8E-194382IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
RQELKHELKQ GYREKLVDIR EEILRKRRAG KLPGDTASTL KAWWQAHAKW PYPTEEDKAR  60
LVQETGLQLK QINNWFINQR KRNWHSNPTS SSSDKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17999RKRNWHSNPTSSSSDKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582111e-138AK358211.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196997.14e-67homeobox protein knotted-1-like 11 isoform X2
SwissprotQ94LW45e-67KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLA0A446XXI66e-67A0A446XXI6_TRITD; Uncharacterized protein
TrEMBLA0A453T5N56e-67A0A453T5N5_AEGTS; Uncharacterized protein
STRINGTraes_7AL_07431A665.22e-67(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.27e-58KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]