PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_6F2D345E2.4
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 165aa    MW: 17668 Da    PI: 10.4637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_6F2D345E2.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000835476123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cg+ F +   L  H  +H
  Traes_5BL_6F2D345E2.4 54 FVCKTCGRAFASFQALGGHRTSH 76
                           89*********999998888777 PP
2zf-C2H212.60.00042105127123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C++Cg  F +   L  H+r+H
  Traes_5BL_6F2D345E2.4 105 HDCHICGLGFGTGQALGGHMRRH 127
                            56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.6E-44977IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.56E-754127No hitNo description
SMARTSM003550.345476IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-105478IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6585481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598105132IPR007087Zinc finger, C2H2
SMARTSM003550.3105127IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-9105130IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGAGMKRARE QEVLSLALSL STDSTSSSAD SAGAPARKRA RRGRVVATSG EGEFVCKTCG  60
RAFASFQALG GHRTSHLRGR HGLELGVGIA RAIKERQKQE DKQQHDCHIC GLGFGTGQAL  120
GGHMRRHREE MALSGAIDRW VALSNQEAGH QAAADRPPVL LELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589901e-101AK358990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149185.12e-86zinc finger protein ZAT4-like
TrEMBLA0A446UTS71e-114A0A446UTS7_TRITD; Uncharacterized protein
STRINGTraes_5BL_6F2D345E2.41e-115(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-13C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]