PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_7F56360BF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 261aa    MW: 27310.8 Da    PI: 8.1522
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_7F56360BF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-0590112123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC+ CgksFs+   L  H  +H
  Traes_5BL_7F56360BF.1  90 FKCSVCGKSFSSYQALGGHKTSH 112
                            89**********99998888777 PP
2zf-C2H213.10.00029160182123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C k F++   L  H r+H
  Traes_5BL_7F56360BF.1 160 HRCSICQKEFPTGQALGGHKRKH 182
                            79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-1290113IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.71590117IPR007087Zinc finger, C2H2
SMARTSM003550.004690112IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.6E-990112No hitNo description
Gene3DG3DSA:3.30.160.602.0E-490113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576674.6E-9155182No hitNo description
PfamPF139124.9E-12159184IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078160182IPR007087Zinc finger, C2H2
SMARTSM003550.028160182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSSSAMEALH ALIPEQHQLD VEAAAAVSSA TSGEESGHVL QGWAKRKRSR RQRSEEENLA  60
LCLLMLSRGG KQRVQAPQPE SFAAPVPAEF KCSVCGKSFS SYQALGGHKT SHRVKQPSPP  120
SDAAAAPLVA LPAVAAILPS AEPATSSTAA SSDGATNRVH RCSICQKEFP TGQALGGHKR  180
KHYDGGVGAA ASSTELLAAA AAESEVGSTG NGSSAARAFD LNIPAVPEFV WRPCAKGKMM  240
WEDDEEVQSP LAFKKPRLLT A
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTWZF1A0.0D16415.1 Triticum aestivum gene for zinc-finger protein WZF1, complete cds.
GenBankWHTWZF1B0.0D16416.1 Triticum aestivum mRNA for zinc-finger protein WZF1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167815.11e-152zinc finger protein 1
SwissprotQ424300.0ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A446UNB30.0A0A446UNB3_TRITD; Uncharacterized protein
STRINGTraes_5BL_7F56360BF.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-32salt tolerance zinc finger
Publications ? help Back to Top
  1. Sakamoto A,Minami M,Huh GH,Iwabuchi M
    The putative zinc-finger protein WZF1 interacts with a cis-acting element of wheat histone genes.
    Eur. J. Biochem., 1993. 217(3): p. 1049-56
    [PMID:8223628]