PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_8DB8274DB1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 137aa    MW: 14615.7 Da    PI: 10.5598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_8DB8274DB1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000154365123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ Cg+sF++   L  H  +H
  Traes_5BL_8DB8274DB1.1 43 FVCKTCGRSFPSFQALGGHRTSH 65
                            89**********99998888777 PP
2zf-C2H214.20.0001395117123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++Cg  F     L  H+r+H
  Traes_5BL_8DB8274DB1.1  95 HQCHICGLEFEMGQALGGHMRRH 117
                             79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0864365IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-114367IPR007087Zinc finger, C2H2
SuperFamilySSF576671.67E-743117No hitNo description
PROSITE profilePS5015710.4084370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139123.5E-1194120IPR007087Zinc finger, C2H2
SMARTSM003550.295117IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.49495122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MVSSMKHHRD EAGASSSLSL SLALGAVADR SKKMRRGGVD GEFVCKTCGR SFPSFQALGG  60
HRTSHLRGRH GLALGLAAGS DKPATKKTTD QKQAHQCHIC GLEFEMGQAL GGHMRRHRDE  120
AVATTAQAPP VLLQLFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198416.14e-77zinc finger protein ZAT8-like
SwissprotQ424534e-20ZAT7_ARATH; Zinc finger protein ZAT7
TrEMBLA0A3B6LV554e-94A0A3B6LV55_WHEAT; Uncharacterized protein
TrEMBLA0A446UTS24e-94A0A446UTS2_TRITD; Uncharacterized protein
STRINGTraes_5BL_8DB8274DB1.17e-95(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.12e-20C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]