PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_9301719551.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 152aa    MW: 16162 Da    PI: 7.7442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_9301719551.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000254971123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C++ F ++  L  H++ H
  Traes_5BL_9301719551.1 49 FSCNYCHRKFFSSQALGGHQNAH 71
                            89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.14E-64576No hitNo description
PROSITE profilePS5015710.994976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEREAPQPHQ LLLHGVSLDL RLDTATHEQR GARRPPTPVA LDQAGKEAFS CNYCHRKFFS  60
SQALGGHQNA HKLERTLAKR SRDADATAAA TATPSSHWLH GGGRELWAYS ASAAAPDSTT  120
MTPMVGMGWA GTGSTTAAGG ESAPEMDLSL KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375923e-38AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBankAP0050903e-38AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBankAP0149653e-38AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-38CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158278.13e-80zinc finger protein 2-like
TrEMBLA0A3B6LQZ01e-107A0A3B6LQZ0_WHEAT; Uncharacterized protein
TrEMBLA0A446UJW01e-107A0A446UJW0_TRITD; Uncharacterized protein
STRINGTraes_5BL_9301719551.11e-107(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.19e-18zinc finger protein 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]