PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_93F0F3F5D.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ZF-HD

Protein Properties

Length: 159aa MW: 16428.1 Da PI: 5.7448

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_93F0F3F5D.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.1	3.6e-32	67	119	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +rY+eClkNhA+s+GghavDGCgEf+++ geeg+++al+CaAC+CHRnFHRre+ Traes_5BL_93F0F3F5D.1 67 ARYRECLKNHAVSIGGHAVDGCGEFIAA-GEEGSIDALRCAACNCHRNFHRRES 119 79***********************9.999******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.3E-29	67	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-22	68	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.3E-30	68	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.699	69	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDFDDHDDGD EEMQMSMPMP VSSSYEPPPP LSTGFGGAGV APNKPPGGGG GGGGELGGRA 60 KAPGGGARYR ECLKNHAVSI GGHAVDGCGE FIAAGEEGSI DALRCAACNC HRNFHRRESD 120 FPAGGEGSPF SPTAMVPYGG VPHHQFSPYY RTPAGYLHH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165793.1	3e-90	zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	5e-64	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A3B6LNA2	1e-111	A0A3B6LNA2_WHEAT; Uncharacterized protein
TrEMBL	A0A446UC86	1e-111	A0A446UC86_TRITD; Uncharacterized protein
STRING	Traes_5BL_93F0F3F5D.1	1e-111	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	4e-27	homeobox protein 21

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]