PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_96D5EA4EE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 396aa    MW: 41548.6 Da    PI: 8.5139
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_96D5EA4EE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.3e-4276151176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +CqvegC +dls  k+y+ rhkvC  hskap v+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Traes_5BL_96D5EA4EE.1  76 RCQVEGCGVDLSGGKTYYCRHKVCLEHSKAPLVVVAGIEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 151
                            6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-3370138IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.85574151IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-3975156IPR004333Transcription factor, SBP-box
PfamPF031103.0E-3377150IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
METGGSGGGD GGGRRPGDDL HGLNFGQKIY FEQEVAGSSS SGGRKGKGPA PARAGGGGGG  60
SGASTPVAGG NASQPRCQVE GCGVDLSGGK TYYCRHKVCL EHSKAPLVVV AGIEQRFCQQ  120
CSRFHQLPEF DQGKRSCRRR LAGHNERRRK PPPGPMSTRY GRLAASFNED PGRLRSFLLD  180
FSYPRAPAGV RDPWPAVQPG DHRMPGTTHW QGSHHEHHPH RSAVAGYGDH HAYNGQGSSS  240
GGGGAPMIPG GFELPSDECM AGVAADSSCA LSLLSTQPWD SSAHSSSHNR SPAMSTTSAF  300
QGSPVAPSVM ASNYMAASSS GSWGSPRGAR SMQHHHHHMQ HDTVMSEVHP SSVHHGQFGE  360
LELALQQGRA APNPPHAEHG SGGAFSHSSN AMNWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28771501184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188000.10.0squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0571e-150SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A3B6LP290.0A0A3B6LP29_WHEAT; Uncharacterized protein
TrEMBLA0A446UDP90.0A0A446UDP9_TRITD; Uncharacterized protein
STRINGTraes_5BL_96D5EA4EE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-44squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]