PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_98D063967.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 232aa    MW: 25470.8 Da    PI: 6.2769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_98D063967.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1956106256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Traes_5BL_98D063967.2  56 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 106
                            69*******.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-1656114No hitNo description
PROSITE profilePS5103224.48756113IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2256114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-3256114IPR001471AP2/ERF domain
SMARTSM003802.3E-3656119IPR001471AP2/ERF domain
PRINTSPR003674.6E-115768IPR001471AP2/ERF domain
PfamPF008471.3E-1257105IPR001471AP2/ERF domain
PRINTSPR003674.6E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MCGGAIIYDY IPAHRRRVST ADFWPDADHS DAYSAAPDKV VVLVAAPRAK RGRTNQYRGI  60
RQRPWGKWAA EIRDPVKGVR VWLGTYPTAE AAARAYDRAA RRIRGAKAKV NFPNEILVSA  120
PAHEASCTMA AAPPAAVLPS PKKEEEGEGL EPAACSCEEV KALSEELMAY ENYMSFLGVP  180
YMEGGAAAAP AAEEAPAELW SFEDSYYPGP LGSVFNWQLW WMPQCNRTSF PC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2253116266ATERF1
3gcc_A5e-2253116266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163333.11e-101ethylene-responsive transcription factor ERF071-like
TrEMBLA0A3B6KM571e-107A0A3B6KM57_WHEAT; Ethylene response factor
STRINGTraes_5BL_98D063967.21e-169(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-28ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]