PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_9C1318B2F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 96aa    MW: 10117.7 Da    PI: 7.7013
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_9C1318B2F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09347344
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           +W++ E e++ +a   +  +   +W+++a+ +g g+t+ +++ ++
  Traes_5BL_9C1318B2F.1  3 AWSESENERFERALDTYDRDtpgRWDRVAAAVGGGKTADDVRRHY 47
                           7*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3E-5153IPR001005SANT/Myb domain
PROSITE profilePS512949.169155IPR017930Myb domain
SuperFamilySSF466894.13E-11358IPR009057Homeodomain-like
CDDcd001676.88E-7351No hitNo description
PfamPF002491.4E-7347IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-5352IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MAAWSESENE RFERALDTYD RDTPGRWDRV AAAVGGGKTA DDVRRHYDRL VDDLRRIEAG  60
GANSNGGTHA AGGSSSNGAG NNGSRGGPGS SRRPQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-154621168RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152537.11e-42protein RADIALIS-like 3
SwissprotQ1A1734e-19RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3B6LYN17e-61A0A3B6LYN1_WHEAT; Uncharacterized protein
TrEMBLA0A446UYB07e-61A0A446UYB0_TRITD; Uncharacterized protein
STRINGTraes_5BL_9C1318B2F.11e-61(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.17e-20RAD-like 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]