PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_9C687EE11.5
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 168aa    MW: 18047.5 Da    PI: 10.0058
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_9C687EE11.5genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000565577123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cg+ F +   L  H  +H
  Traes_5BL_9C687EE11.5 55 FVCKTCGRAFATFQALGGHRTSH 77
                           89**********99998888777 PP
2zf-C2H212.60.00043105127123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F     L  H+r+H
  Traes_5BL_9C687EE11.5 105 HECHICGLGFEMGQALGGHMRRH 127
                            79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.1E-44978IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-95579IPR007087Zinc finger, C2H2
SMARTSM003550.385577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6165582IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-855127No hitNo description
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PfamPF139121.9E-10105130IPR007087Zinc finger, C2H2
SMARTSM003550.49105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRAREEEPK PTMSLALSLG TDSAPSAGTS SDSGAGAPAK RRRGAVVVTS GEGEFVCKTC  60
GRAFATFQAL GGHRTSHLRG RHGLELGVGV ARAIKERKKR EEKQHECHIC GLGFEMGQAL  120
GGHMRRHREQ MAPRGADDRW VALLPDQEVA GHHAAADQPP PVLLQLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4082242e-89EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198432.11e-103zinc finger protein ZAT12-like
TrEMBLA0A446UTS81e-116A0A446UTS8_TRITD; Uncharacterized protein
STRINGTraes_5BL_9C687EE11.51e-118(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-19C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]