PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_9CD03DFCE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 497aa    MW: 53551 Da    PI: 9.5975
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_9CD03DFCE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.65.6e-12170254170
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekk 70 
                            +W+++ +  L+ea++ ++   +r+klk  +W +++  +               +++g  ++p+qCk+k e+++kry+++ + + +
  Traes_5BL_9CD03DFCE.1 170 EWSESGISRLLEAYEAKWLLRNRAKLKWSDWVDIAHDVsahcsssdhaskpgaAAGGTAKTPNQCKNKVESMKKRYRAESAAATR 254
                            5****************************************************************************99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-13168276No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
VTQRLLWIQL FVRPAAARHP LPHHNRRPAL SAPSGKLAPP EIPFFRHPWK KGRKRRHLFR  60
SQLQARDTPS SPDRSRGRPP ASEIEPSSSS SRAEFRLWCT GFEQIPVPER DLLADRLTES  120
DGLGPTAPLP LLKLGPQFWG SGCSAAASMD GLPDAAPPAP APQQQPKRDE WSESGISRLL  180
EAYEAKWLLR NRAKLKWSDW VDIAHDVSAH CSSSDHASKP GAAAGGTAKT PNQCKNKVES  240
MKKRYRAESA AATRAGVAGA ASASGGPSWR FFGRMDGLLK GPAAGCSGQP QAQPEPSNDG  300
IVQPRAPLKA EPEADAEADT ALQQPPDTAG PPGALSELLN ADANGSATVK AEKTVDQATH  360
KETSRAADSD AANVSSPRSK EVEAEANDDG AEEAWDAPGR KRKGPELDVA RSIELLASSF  420
VKIERARLEV YRDTERMRAE AEVKRGEMEL RRTEIMAKTQ LQIARLFAKR LKECVGGNGG  480
SSSQVDTLAK KGENGSG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3587530.0AK358753.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1082J08.
GenBankAK3593900.0AK359390.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1095N03.
GenBankAK3612610.0AK361261.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136F03.
GenBankAK3621870.0AK362187.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003C24.
GenBankAK3647960.0AK364796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2028H13.
GenBankAK3665320.0AK366532.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043N23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168535.10.0trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A3B6LSH00.0A0A3B6LSH0_WHEAT; Uncharacterized protein
STRINGTraes_5BL_9CD03DFCE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-37sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]