PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_B038BE0A3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 136aa    MW: 14774.8 Da    PI: 9.6182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_B038BE0A3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.001894116123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cg  F     +  H+r+H
  Traes_5BL_B038BE0A3.1  94 HQCHVCGLEFEMGQAMGGHMRRH 116
                            79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.514264IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.34E-642116No hitNo description
PROSITE profilePS501579.6814269IPR007087Zinc finger, C2H2
PfamPF139127.6E-114266IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139121.7E-1093119IPR007087Zinc finger, C2H2
SMARTSM003550.4694116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.16294121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVSSMKQCRD EAQEVPLSLS LSLGVMADRS KKQRRGGADG EFVCKTCSRA FPSFQALGGH  60
RTSHLRGRHG LALGLTSGSD QPGTKKTTDQ KQAHQCHVCG LEFEMGQAMG GHMRRHREQE  120
AATTAQAPPV LLQLFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2535541e-151EU253554.1 Triticum aestivum C2H2 zinc finger protein (ZFP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198422.16e-86zinc finger protein ZAT8-like
RefseqXP_020199617.16e-86zinc finger protein ZAT8-like
SwissprotQ9LX853e-19ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A3B6LWG64e-94A0A3B6LWG6_WHEAT; Uncharacterized protein
TrEMBLA0A446UTV64e-94A0A446UTV6_TRITD; Uncharacterized protein
STRINGTraes_5BL_B038BE0A3.16e-95(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-20C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]