PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_B569B5FF4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 69aa    MW: 8101.41 Da    PI: 9.3945
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_B569B5FF4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.61.5e-11269178
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78
                           +fYn Y+ e+GF vr +ks+ + +  +  +++ vC + gk+ +e+++         ++r+gC+a++++ +++d+ w++
  Traes_5BL_B569B5FF4.1  2 EFYNLYSWECGFGVRLAKSRLNVER-KRCMQEIVCACAGKPIRENSR---------SSRCGCNAMIRLLRSNDKGWYI 69
                           6*****************9999554.478899*******99886555.........99****************9*97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-8269IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
YEFYNLYSWE CGFGVRLAKS RLNVERKRCM QEIVCACAGK PIRENSRSSR CGCNAMIRLL  60
RSNDKGWYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703067e-56HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155776.15e-43protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453C7R52e-42A0A453C7R5_AEGTS; Uncharacterized protein
STRINGTraes_2DL_01DEC201E.21e-42(Triticum aestivum)
STRINGTraes_5BL_B569B5FF4.18e-44(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.16e-08FAR1-related sequence 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]