PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_B94C45A8F.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 291aa MW: 31121.9 Da PI: 4.5811

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_B94C45A8F.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	87.6	2.8e-27	1	94	24	110
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......kaaksaakskksqksa 104 ++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ + s+ s+ + ++ + +++s ++q++ Traes_5BL_B94C45A8F.1 1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANFSsLNISRAASGTTRPAPfpalalHPHHHHHQSPHPQHDM 88 9**********************************************88844444444444333335555542222233333344443 PP TCP 105 asalnl 110 +++l + Traes_5BL_B94C45A8F.1 89 STMLGY 94 333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.264	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.9E-24	1	85	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAILAAT GTGTIPANFS SLNISRAASG 60 TTRPAPFPAL ALHPHHHHHQ SPHPQHDMST MLGYNHLLPP PQEPPQDANS PGSFMRKRYR 120 EDLFKEDDER HDPNAPKARE QQVAPPAAMW AVAPNSAAPG GAFWMLPVSA SQAATARPTE 180 QPMWSFGGGG GSSTVQAPLQ FMSTRVNYPS SGGAMGGMPD TSIGMLAGLN AYDRGVGGTE 240 EEQQQQQQQE QDQQQEMEQQ RDGSGGGNEG EEDGDDDSGG EEEGHGNNSS Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355813	0.0	AK355813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1026F19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166466.1	1e-132	transcription factor PCF3-like
Swissprot	Q53PH2	4e-50	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A3B6LH18	0.0	A0A3B6LH18_WHEAT; Uncharacterized protein
TrEMBL	A0A446U1I6	0.0	A0A446U1I6_TRITD; Uncharacterized protein
STRING	Traes_5BL_B94C45A8F.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	5e-36	TCP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]