PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_BA26BA910.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 416aa    MW: 45247.4 Da    PI: 6.5658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_BA26BA910.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-06177199123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C+ Cgk F+r  nL+ H+r H
  Traes_5BL_BA26BA910.1 177 HCCKVCGKGFKRDANLRMHMRGH 199
                            569******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.6E-5176200No hitNo description
SMARTSM003550.011177199IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-5177199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531177204IPR007087Zinc finger, C2H2
PROSITE patternPS000280178199IPR007087Zinc finger, C2H2
SMARTSM0035537225258IPR015880Zinc finger, C2H2-like
SMARTSM0035539263285IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MMCSSDHFDG NNHLYLQPNH QRGTGGMEAC DLERIGHEQS RHGQEAGEHR SDPSAALTTY  60
LTFLEHKIGH LRGILCSTPR HQQQQRAIVS AELRCIIVQL VSIANDLASD SGTGNGVGAA  120
DAFTFERCEE RSPSLSNATH DDSDDHADAG GEEEEEGDGP YEVVQIEKEE ILAPHAHCCK  180
VCGKGFKRDA NLRMHMRGHG DQYKAPGALA RPGSPTPANG RRFFYSCPYA GCKRNREHRD  240
FQPLKTPVCV KNHYRRSHCD KSHVCRRCGV KRFSVLADLR THEKHCGRDR WVCSCGVSFS  300
RKDKLFAHVA IFDGGHTPAL PPSDDEATGH CTAATATTTA IDSIVPGSTQ PLPAGSEALN  360
VVDQSFSGQM LDGLSCSGAK GGIDDVRAKL SSPVGIDFCD FDGFDLLGAV AMDFNF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3667080.0AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188988.10.0zinc finger protein STAR3-like
SwissprotQ943I63e-91STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3B6LW590.0A0A3B6LW59_WHEAT; Uncharacterized protein
STRINGTraes_5BL_BA26BA910.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.28e-82C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]