PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_C94A0F1D4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 259aa    MW: 27428.6 Da    PI: 9.939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_C94A0F1D4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-181261255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr+++ +g++++eIrdp     + +r +lg+f+taeeAa+a++aa+ ++ g
  Traes_5BL_C94A0F1D4.1 12 RYRGVRQRR-WGKFASEIRDPI----QgRRLWLGTFDTAEEAAAAYDAAKIRISG 61
                           69****998.**********82....36*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.1011274IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-181263IPR016177DNA-binding domain
CDDcd000189.19E-161244No hitNo description
PfamPF008479.2E-121261IPR001471AP2/ERF domain
SMARTSM003802.0E-281276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-251263IPR001471AP2/ERF domain
PRINTSPR003672.1E-101324IPR001471AP2/ERF domain
PRINTSPR003672.1E-103551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
PPSAGARTPS VRYRGVRQRR WGKFASEIRD PIQGRRLWLG TFDTAEEAAA AYDAAKIRIS  60
GSRRPADGFP FSFPPPEPAK PTVLRLPMPQ PAKPTILRLP MPQPAKRITS PPPPPPPPEP  120
AKPAISPPPL PAKPFALPLK LRLKLSFNAQ VKDKGWNWCS AGDVKEEEDG GCDGEAKVGD  180
VSIAGEVKVE AGGCAGEVKV EGVGCCADES KEAGGSSEVQ AVKPMWAMIT GKRKKRSGCG  240
TRVGALHASS VCVEEVGGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161363657ATERF1
3gcc_A1e-161363657ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568411e-140AK356841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040O03.
GenBankAK3631801e-140AK363180.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013E23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174667.11e-126actin cytoskeleton-regulatory complex protein pan-1-like
TrEMBLA0A3B6LW660.0A0A3B6LW66_WHEAT; Uncharacterized protein
STRINGTraes_5BL_C94A0F1D4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.17e-14ERF domain protein 10
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]