PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_CBFAD4B59.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 251aa    MW: 26517 Da    PI: 6.261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_CBFAD4B59.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-1161107354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r+h e+E+rRR+ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  Traes_5BL_CBFAD4B59.1  61 RNHREAEKRRRERIKSHLDRLRAVLACD-----PKIDKATLLAKAVERVREL 107
                            68************************98.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1158111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.50358107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-861107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1062110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-764113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MFPAEASFAG AEAAMLPPFF VGSMWQSAPG GGVAAALSEE DEVAAAAAAE AAHDRAVVAT  60
RNHREAEKRR RERIKSHLDR LRAVLACDPK IDKATLLAKA VERVRELKQR MAGVVGEAAA  120
PASHLFPTEH DEIVVLASGG GAGGAAAVFE ASLCCDDRSD LLPGLIDTLR ALRLRTLRAE  180
MATLGGRVRN VLVLARDAGE HADDDYSSSS EDGGADFLKE ALRALVERQG AAAGDRPKRR  240
RVADMNMQAA A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175056.11e-130transcription factor bHLH106-like
SwissprotO806748e-49BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A3B6LUR81e-175A0A3B6LUR8_WHEAT; Uncharacterized protein
STRINGTraes_5BL_CBFAD4B59.11e-175(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-35bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]