PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_D53A846BE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 225aa    MW: 24867.4 Da    PI: 11.2423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_D53A846BE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00085118140123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cg+ F +   L  H  +H
  Traes_5BL_D53A846BE.1 118 FVCKTCGRAFETFQALGGHRTSH 140
                            89*********999998888777 PP
2zf-C2H213.10.0003169191123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C++Cg  F +   L  H+r+H
  Traes_5BL_D53A846BE.1 169 HDCHICGLGFETGQALGGHMRRH 191
                            56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-5114144No hitNo description
SMARTSM003550.42118140IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-10118142IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492118145IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-5166195No hitNo description
SMARTSM003550.22169191IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-9169194IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPATQPIYKR GRLPCRFIHP FILLPNSQPL TQLQRRKRAS IKIQQIIKRS SKSISMGAGM  60
KRAREEEPTV SLALSLSTDS SASTTTSDDS GTGAPTPAAP GKRTRRRRVV ATSGEGDFVC  120
KTCGRAFETF QALGGHRTSH LRGRHGLELG VGVARAIKER QRREDRQQHD CHICGLGFET  180
GQALGGHMRR HREEMALDRW VALSDQEAGH QAAADRLPVL LELFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591611e-174AK359161.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090O23.
GenBankAK3666281e-174AK366628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198412.11e-84zinc finger protein ZAT4-like
TrEMBLA0A446UTV41e-162A0A446UTV4_TRITD; Uncharacterized protein
STRINGTraes_5BL_D53A846BE.11e-163(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-17C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]