PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_DB6E9FDB9.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CO-like
Protein Properties Length: 325aa    MW: 35477.3 Da    PI: 6.3181
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_DB6E9FDB9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.72.4e-082164441
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           ++C+ + + +  ++C+ ++  lC+ C    H+       H++vp
  Traes_5BL_DB6E9FDB9.2 21 QRCDSCRSAPCAFYCRADSAALCAACDADVHSAntlasrHRRVP 64
                           79*****************************6689999999988 PP
2CCT66.57.5e-23256299144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea++ RY+eKrk R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a
  Traes_5BL_DB6E9FDB9.2 256 REARVHRYREKRKMRRFEKTIRYASRKAYAETRPRIKGRFAKRA 299
                            9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.3051865IPR000315B-box-type zinc finger
SMARTSM003361.6E-131865IPR000315B-box-type zinc finger
PfamPF006432.2E-62164IPR000315B-box-type zinc finger
CDDcd000210.001152265No hitNo description
PfamPF062039.1E-17256298IPR010402CCT domain
PROSITE profilePS5101716.688256298IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MIKAEPELRG QLRGGGSMLQ QRCDSCRSAP CAFYCRADSA ALCAACDADV HSANTLASRH  60
RRVPMGAVAP ASPAGGAFVV RPGGVNSSWP IREGRRSYYD DGEGEGDEEE ATSWLLLDPL  120
RGPEGDAPAF GDALVADFLD LGRAGEKDAS GKEYRGHGVE SNEGSHELVV PGEPVAQLHE  180
RQDFTAEMSY DAQNSNHGYG FGATFQRSLS MSSSPDNSST VQDVTSSYMR RSESSVDLFS  240
AAAHMSPQFM GMAMDREARV HRYREKRKMR RFEKTIRYAS RKAYAETRPR IKGRFAKRAD  300
ADLEVDQYFS AAVLSDSSCG VVPTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263269REKRKMR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as repressor of flowering under SD conditions, independently of HD1, EHD1, MADS50 and MADS51. Controls flowering time under SD conditions by negatively regulating the expression of HD3A and FTL. {ECO:0000269|PubMed:18449564}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases after the beginning of the dark period, peaks at dawn, stays high four hours and gradually decreases until sunset. {ECO:0000269|PubMed:18449564}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4904710.0AF490471.1 Hordeum vulgare subsp. vulgare cultivar CI16155 CONSTANS-like protein (CO3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196886.10.0zinc finger protein CO3-like
SwissprotO821171e-124CO3_ORYSJ; Zinc finger protein CO3
TrEMBLA0A3B6LKE60.0A0A3B6LKE6_WHEAT; Uncharacterized protein
TrEMBLA0A446U5P70.0A0A446U5P7_TRITD; Uncharacterized protein
STRINGTraes_5BL_DB6E9FDB9.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1435899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-30CONSTANS-like 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]