PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_E15759DAD.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 478aa MW: 53570.1 Da PI: 5.0123

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_E15759DAD.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	95.6	5.2e-30	2	82	14	103
GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 14 elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 +++ ++sw +nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i+r+k Traes_5BL_E15759DAD.1 2 ATDAVVSWGPANNSFIVWNTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLKTINRRK 80 57899**999*************************************999.........********************9 PP XX CS HSF_DNA-bind 102 se 103 + Traes_5BL_E15759DAD.1 81 PS 82 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.36E-27	1	79	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-43	1	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.9E-31	2	79	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.0E-26	3	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-10	28	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	29	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-10	41	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
PATDAVVSWG PANNSFIVWN TPEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDKWEF 60 ANEGFLRGQK HLLKTINRRK PSHANNQVQV PQQQRHHQQQ HQQQPQLQNA PMPSCVEVGK 120 FGMEEEIEML KRDKNVLMQE LVRLRQQQQT TDHQLQTLGK RLHGMEQRQQ QMMSFLAKAM 180 QSPGFLAQFV QQNENSKRRI VAANKKRRLP KQDDGLNPES ALLDGQIIKY QPMINEAAKA 240 MLRKILQQDT SPHRFESMGN SDNLLLENCM PSAQTFDSSS STRNSAVTLA EVPGNSGMPY 300 MPTSSGLSAI CSSSTPPEMQ CPVLDSNSST QLPTQLPNMS AASSIPKAMT PGLSDISIPG 360 FPDLHDLITE DAINIPVENF AMPGPECIFP LPDEGSDDSV PMDPIDTDET DDTQKLPGII 420 DSFWEQFLCA SPLSIDNDEV DSGLLDTREA QEENGWTRTE NLANLTEQMG LLSSNHRG

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

PATDAVVSWG PANNSFIVWN TPEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDKWEF  60
ANEGFLRGQK HLLKTINRRK PSHANNQVQV PQQQRHHQQQ HQQQPQLQNA PMPSCVEVGK  120
FGMEEEIEML KRDKNVLMQE LVRLRQQQQT TDHQLQTLGK RLHGMEQRQQ QMMSFLAKAM  180
QSPGFLAQFV QQNENSKRRI VAANKKRRLP KQDDGLNPES ALLDGQIIKY QPMINEAAKA  240
MLRKILQQDT SPHRFESMGN SDNLLLENCM PSAQTFDSSS STRNSAVTLA EVPGNSGMPY  300
MPTSSGLSAI CSSSTPPEMQ CPVLDSNSST QLPTQLPNMS AASSIPKAMT PGLSDISIPG  360
FPDLHDLITE DAINIPVENF AMPGPECIFP LPDEGSDDSV PMDPIDTDET DDTQKLPGII  420
DSFWEQFLCA SPLSIDNDEV DSGLLDTREA QEENGWTRTE NLANLTEQMG LLSSNHRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-22	1	82	31	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF208541	0.0	KF208541.1 Triticum aestivum heat shock factor A1a (HsfA1a) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176135.1	0.0	heat stress transcription factor A-1-like
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A3B6LYN2	0.0	A0A3B6LYN2_WHEAT; Uncharacterized protein
STRING	Traes_5BL_E15759DAD.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-112	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]