PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_ED508277A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 555aa    MW: 61007 Da    PI: 6.9453
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_ED508277A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.88.5e-1071015421374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                            l++lL++cA  v++g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa +l++  ++l++al +s++s+ +   + aa++  +++
  Traes_5BL_ED508277A.2 101 LISLLYQCASEVAAGEFDRANLCLEHIMQLASLDApHTLQRLAAVFADALACKLLKLLPGLSRALLSSSSSD-DAHLVPAARRHMFDM 187
                            5799*******************************99****************************9888874.5555567888999** PP

                   GRAS  88 sPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                             P+lk+++lt+N+aI ea+ege+ vH++D++  + +++QW+aL++a+  R++g+p+lRiT+v++    ske l  +   L + Ae+++
  Traes_5BL_ED508277A.2 188 LPFLKLAYLTTNHAIIEAMEGERFVHVVDLSgpAANPAQWIALFHAFRGRRDGTPNLRITAVHE----SKEFLAGMSAVLVREAEAFD 271
                            ******************************866899****************************....9******************* PP

                   GRAS 174 vpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll........................................... 214
                            +pf+fn+ v+ rled++l++L    rv++gEalaV+++lqlhrll                                           
  Traes_5BL_ED508277A.2 272 IPFQFNA-VEARLEDMDLDALrhnlRVRSGEALAVSVALQLHRLLaaddtggrrqggltplqivarsspssfgellerelntrlqlsp 358
                            *******.799999999987755447888*********************************************************** PP

                   GRAS 215 ......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres. 279
                                                  +++ +    + ++L++vk lsPk++vv+eqea+hn++ F erf eal+yy++lfd+le  ++++  
  Traes_5BL_ED508277A.2 359 dasafssmspqspigghfpaggQQRPK----IGSFLSAVKALSPKIMVVTEQEANHNGAAFHERFDEALNYYASLFDCLERAAAAQRg 442
                            ****************99755444444....556*********************************************777655544 PP

                   GRAS 280 ...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgW 362
                                er+ vEr +lg+ei+++vaceg er+erhe++++W  r+e+aG++ v ls++ a++a+ ll++ ++ gy+v ++   ++++l+W
  Traes_5BL_ED508277A.2 443 saaAERARVERSVLGEEIRSIVACEGGERKERHERARQWAGRMEAAGMERVGLSYSGAMEARKLLQRSGWGGYEVRHDaeGHCFFLCW 530
                            5889***********************************************************************9553378999*** PP

                   GRAS 363 kdrpLvsvSaWr 374
                            +++pL++v+aWr
  Traes_5BL_ED508277A.2 531 HKKPLYAVTAWR 542
                            ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.61975520IPR005202Transcription factor GRAS
PfamPF035142.9E-104101542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MNSRPRHCCC FEPDNGVEQC PWLDSLDNLN YSLQGVEPRT WGGIASIMFQ QQQPPQRQQQ  60
QEDVMSSATS SPASTLYSPT PYAFAGTSVQ ELSSDQCSVR LISLLYQCAS EVAAGEFDRA  120
NLCLEHIMQL ASLDAPHTLQ RLAAVFADAL ACKLLKLLPG LSRALLSSSS SDDAHLVPAA  180
RRHMFDMLPF LKLAYLTTNH AIIEAMEGER FVHVVDLSGP AANPAQWIAL FHAFRGRRDG  240
TPNLRITAVH ESKEFLAGMS AVLVREAEAF DIPFQFNAVE ARLEDMDLDA LRHNLRVRSG  300
EALAVSVALQ LHRLLAADDT GGRRQGGLTP LQIVARSSPS SFGELLEREL NTRLQLSPDA  360
SAFSSMSPQS PIGGHFPAGG QQRPKIGSFL SAVKALSPKI MVVTEQEANH NGAAFHERFD  420
EALNYYASLF DCLERAAAAQ RGSAAAERAR VERSVLGEEI RSIVACEGGE RKERHERARQ  480
WAGRMEAAGM ERVGLSYSGA MEARKLLQRS GWGGYEVRHD AEGHCFFLCW HKKPLYAVTA  540
WRPAGYHHSG GARSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-1910754325380Protein SCARECROW
5b3h_A9e-1910754324379Protein SCARECROW
5b3h_D9e-1910754324379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152680.10.0scarecrow-like protein 3
TrEMBLA0A446U2Q50.0A0A446U2Q5_TRITD; Uncharacterized protein
STRINGTraes_5BL_ED508277A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-104scarecrow-like 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]